C$388 Cheap Flights from Panama City (PTYA) to San Juan (SJUA)

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Flight deals from Panama City to San Juan

Looking for a cheap last-minute deal or the best return flight from Panama City to San Juan? If you want to travel next month, return fares start from C$738. Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Panama City to San Juan

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Panama City to San Juan flights are currently cheapest in September.

Which airlines fly from Panama City to San Juan?

Panama City to San Juan: Flight information

The things to know before you go.
Cheapest flight foundC$388
Cheapest month to flySeptember
Average flight time2 hrs, 51 mins
Most popular airlineCopa
Average flights per week23

Finding cheap flights from Panama City to San Juan: Frequently asked questions

There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.
The best price we found for a return flight from Panama City to San Juan is C$630. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
2 hours and 51 minutes is the average flight time from Panama City to San Juan.
Copa and KLM fly direct from Panama City to San Juan.
As of May 2026, there are 23 flights per week flying from Panama City to San Juan.
The cheapest month to fly from Panama City to San Juan is usually October.
If you're flying from Panama City, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from C$630.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Panama City to San Juan on Monday, October 5, 2026.
Yes – the average flight time is 2 hours and 51 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.
In May, the average temperature is usually around 27°C. August is typically the warmest month in San Juan, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is January, with temperatures averaging 23°C. The rainiest month is September.
The cheapest airline that flies to San Juan is Wingo. And the cheapest airline that flies to San Juan Luis Munoz Marin Airport is Copa.

Travelling from Panama City to San Juan: what you need to know

  • Get your vacation planning started by considering the departure point for your flight from Panama City to San Juan. Tocumen International Airport (PTY) and Panama Pacifico Airport (BLB) are the main airports in Panama City.

  • Luis Munoz Marin International Airport (SJU) is the primary hub where you can disembark in San Juan.

  • 2 hours 51 minutes is the average time for a direct flight from Panama City to San Juan. Following the UTC-4 timezone, San Juan is 1 hour ahead of Panama City.

  • Tocumen International Airport (PTY) to Luis Munoz Marin International Airport (SJU) is the most traveled route between these two cities. There are 15 weekly flights to choose from. If you have things to do before leaving, the last flight from Panama City to San Juan is with Copa Airlines at 18:50. Go for the first PTY to SJU departure operated by Copa Airlines at 09:11 if you want to get going early.

  • For a smooth journey, arrive at the airport two hours ahead of international flights and an hour before domestic departures. This way, you can comfortably catch your flight from Panama City to San Juan.

  • Be prepared for longer queues during popular months like June and other peak seasons. Arriving up to four hours ahead of international flights and two hours for a domestic departure is a smart move.

  • When travelling to Puerto Rico for tourism purposes, you will need an embassy visa if you hold a passport from Panama. However, visa rules can change and you may need other documents depending on the length and purpose of your stay. Always check the most up-to-date guidelines before booking your cheap flight from Panama City to San Juan.

Flying from Panama City

Tocumen International Airport (PTY)

  • Set out from Tocumen International Airport (PTY) on a nonstop flight from Panama City to San Juan. From PTY, you can fly directly into Luis Munoz Marin International Airport (SJU).

  • You can lock in a direct flight from Panama City to San Juan with Copa Airlines. This popular carrier operates departures from PTY.

  • Stopovers are the perfect opportunity to take a travel break — and maybe even visit a new city. When searching for flights from Panama City to San Juan leaving from Tocumen International Airport, deselect the 'Direct flights only' box to see where you can visit along the way. Popular options include:

    • Jose Maria Cordova International Airport (MDE)

    • Punta Cana International Airport (PUJ)

    • Las Americas International Airport (SDQ)

  • PTY is around 21 kilometres from central Panama City. If you're driving, catching a cab or ride-sharing from the centre, it'll take 21 minutes or so to get there, depending on traffic conditions. If you're using public transport, expect the travel time to be around 1 hour and 5 minutes.

  • Planning to catch an early flight from Panama City to San Juan? Avoid the hassle of rushing to the terminal (and sneak in some extra snooze time) by picking one of these stays near Tocumen International Airport:

Panama Pacifico Airport (BLB)

  • Visit friends or family or just take a moment to recharge with a stopover. If you'd like to break up your flight from Panama City to San Juan, check out these options when heading out from Tocumen International Airport:

    • Jose Maria Cordova International Airport (MDE)

    • Punta Cana International Airport (PUJ)

    • Las Americas International Airport (SDQ)

  • The drive from central Panama City to BLB generally takes 22 minutes, depending on traffic conditions. It's roughly 16 kilometres from the city centre to the airport.

  • Kick off your vacation early with an extra night away from home. Before catching your flight from Panama City to San Juan, chill out in one of these hotels near Panama Pacifico Airport:

Arriving in San Juan

Luis Munoz Marin International Airport (SJU)

Fernando Luis Ribas Dominicci Airport (SIG)

  • The centre of San Juan is about 8 kilometres from Fernando Luis Ribas Dominicci Airport (SIG). After your flight from Panama City to San Juan has landed and you've made your way through the terminal, the drive should be around 14 minutes.

  • You can also travel by public transport, which will take around 58 minutes.

  • There are some cozy hotels where you can rest ahead of your adventure near SIG. Kick back after your flight from Panama City to San Juan at any of these perfectly located options:

How to find the cheapest flights from Panama City to San Juan

  • Currently, C$388 is the lowest price we've found for a one-way ticket from Panama City to San Juan. The cheapest price for a return flight is C$630. Keep in mind fares may change due to demand at the time of booking.

  • To snag cheap flights from Panama City to San Juan, reserve your trip 9 months ahead of your departure.

  • Schedule your trip for May. That's the cheapest month for tickets from Panama City to San Juan. If you have flexibility with your dates, use the 'Whole month' tool to see the lowest price across each month.

  • Getting a cheap ticket from Panama City to San Juan is a piece of cake with Price Alerts. All you need to do is set up one of these automatic alerts and we'll get in touch as soon as there's a better deal.

  • Use filters to find your ideal journey. To see the 'Fastest,' 'Best' or 'Cheapest' flights from Panama City to San Juan, use the 'Sort by' function. You can also filter results by departure and arrival times, airline, and journey duration.

Best time to go to San Juan

  • It's time to figure out your travel dates for your flight from Panama City to San Juan. July is the most popular month for a trip to San Juan. If you like a quieter vibe, go in May.

  • The warmest month in San Juan is September, with the temperature ranging between 23ºC and 33ºC. Book your flights from Panama City to San Juan in this month if this is the kind of weather you like.

  • February has average temperatures of between 20ºC and 28ºC. Search for cheap flights from Panama City to San Juan sometime around then if you want to travel when it's cooler.

More about San Juan

  • Start your San Juan trip right by choosing the perfect place to stay. After booking your flight from Panama City to San Juan, check out our range of hotels including:

  • All great vacations should include some sightseeing. Castillo San Felipe del Morro, La Garita del morro de san juan bahia and Fortaleza Street are must-visits when exploring San Juan.

Complete your San Juan trip with a car rental

  • Browse our lineup of car rentals once you've found your hotel and cheap flight from Panama City to San Juan. Whether you're looking for a compact ride, an SUV or something more luxurious, you can compare companies in one go to find the perfect deal.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.